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1

A Discussion of Molecular Biology Methods for Protein Engineering

Alexander Zawaira, Anil Pooran, Samantha Barichievy, Denis Chopera

Journal:

Molecular Biotechnology

Year:

2012

Language:

english

File:

PDF, 2.94 MB

english, 2012

2

Modulation of HIV reservoirs by host HLA: bridging the gap between vaccine and cure

Zabrina L Brumme, Denis R Chopera, Mark A Brockman

Journal:

Current Opinion in Virology

Year:

2012

Language:

english

File:

PDF, 568 KB

english, 2012

3

A method for Killer-cell Immunoglobulin-like Receptor (KIR) 3DL1/3DS1 genotyping using DNA recovered from frozen plasma

Shahid, Aniqa, Chopera, Denis R., Martin, Eric, Penney, Kali A., Milloy, M.-J., Brumme, Zabrina L.

Journal:

Journal of Immunological Methods

Year:

2013

Language:

english

File:

PDF, 1020 KB

english, 2013

4

Limited evidence for alterations in Gag-mediated HIV replication capacity over the course of the North American epidemic (1979-present)

L Cotton, D Chopera, K Penney, J Carlson, E Martin, A Le, T Kuang…

Journal:

Year:

2012

Language:

english

File:

PDF, 67 KB

english, 2012

5

Beneficial HLA-mediated viral polymorphisms on the transmitted virus additively influence disease progression in HIV-1, subtype C infection

RS Ntale, DR Chopera, NK Ngandu, M Abrahams, A Debra, M Mlotswa, L Werner…

Journal:

Year:

2012

Language:

english

File:

PDF, 65 KB

english, 2012

6

Nef-mediated down-regulation of CD4 and HLA class I in HIV-1 subtype C infection: Association with disease progression and influence of immune pressure

Mann, Jaclyn K., Chopera, Denis, Omarjee, Saleha, Kuang, Xiaomei T., Le, Anh Q., Anmole, Gursev, Danroth, Ryan, Mwimanzi, Philip, Reddy, Tarylee, Carlson, Jonathan, Radebe, Mopo, Goulder, Philip J.R.,

Journal:

Year:

2014

Language:

english

File:

PDF, 2.46 MB

english, 2014

7

Uncommon Pathways of Immune Escape Attenuate HIV-1 Integrase Replication Capacity

Brockman, M. A., Chopera, D. R., Olvera, A., Brumme, C. J., Sela, J., Markle, T. J., Martin, E., Carlson, J. M., Le, A. Q., McGovern, R., Cheung, P. K., Kelleher, A. D., Jessen, H., Markowitz, M., Ros

Journal:

Journal of Virology

Year:

2012

Language:

english

File:

PDF, 1.62 MB

english, 2012

8

Virological and Immunological Factors Associated with HIV-1 Differential Disease Progression in HLA-B*58:01-Positive Individuals

Chopera, D. R., Mlotshwa, M., Woodman, Z., Mlisana, K., de Assis Rosa, D., Martin, D. P., Abdool Karim, S., Gray, C. M., Williamson, C.

Journal:

Journal of Virology

Year:

2011

Language:

english

File:

PDF, 2.54 MB

english, 2011

9

Intersubtype Differences in the Effect of a Rare p24 Gag Mutation on HIV-1 Replicative Fitness

Chopera, D. R., Cotton, L. A., Zawaira, A., Mann, J. K., Ngandu, N. K., Ntale, R., Carlson, J. M., Mlisana, K., Woodman, Z., de Assis Rosa, D., Martin, E., Miura, T., Pereyra, F., Walker, B. D., Gray,

Journal:

Journal of Virology

Year:

2012

Language:

english

File:

PDF, 2.11 MB

english, 2012

10

Early immune adaptation in HIV-1 revealed by population-level approaches

Martin, Eric, Carlson, Jonathan M, Le, Anh Q, Chopera, Denis R, McGovern, Rachel, Rahman, Manal A, Ng, Carmond, Jessen, Heiko, Kelleher, Anthony D, Markowitz, Martin, Allen, Todd M, Milloy, M-J, Carri

Journal:

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

11

Fluidity of HIV-1-Specific T-Cell Responses during Acute and Early Subtype C HIV-1 Infection and Associations with Early Disease Progression

Mlotshwa, M., Riou, C., Chopera, D., de Assis Rosa, D., Ntale, R., Treunicht, F., Woodman, Z., Werner, L., van Loggerenberg, F., Mlisana, K., Abdool Karim, S., Williamson, C., Gray, C. M.

Journal:

Journal of Virology

Year:

2010

Language:

english

File:

PDF, 1.88 MB

english, 2010

12

Identification of Effective Subdominant Anti-HIV-1 CD8+ T Cells Within Entire Post-infection and Post-vaccination Immune Responses

Hancock, Gemma, Yang, Hongbing, Yorke, Elisabeth, Wainwright, Emma, Bourne, Victoria, Frisbee, Alyse, Payne, Tamika L., Berrong, Mark, Ferrari, Guido, Chopera, Denis, Hanke, Tomas, Mothe, Beatriz, Bra

Journal:

Year:

2015

Language:

english

File:

PDF, 873 KB

english, 2015

13

Temporal Association of HLA-B81:01- and HLA-B39:10-Mediated HIV-1 p24 Sequence Evolution with Disease Progression

Ntale, R. S., Chopera, D. R., Ngandu, N. K., Assis de Rosa, D., Zembe, L., Gamieldien, H., Mlotshwa, M., Werner, L., Woodman, Z., Mlisana, K., Abdool Karim, S., Gray, C. M., Williamson, C.

Journal:

Journal of Virology

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

14

Transmission of HIV-1 CTL Escape Variants Provides HLA-Mismatched Recipients with a Survival Advantage

Chopera, Denis R., Woodman, Zenda, Mlisana, Koleka, Mlotshwa, Mandla, Martin, Darren P., Seoighe, Cathal, Treurnicht, Florette, de Rosa, Debra Assis, Hide, Winston, Karim, Salim Abdool, Gray, Clive M.

Journal:

Year:

2008

Language:

english

File:

PDF, 666 KB

english, 2008

15

Genotypic and Functional Impact of HIV-1 Adaptation to Its Host Population during the North American Epidemic

Cotton, Laura A., Kuang, Xiaomei T., Le, Anh Q., Carlson, Jonathan M., Chan, Benjamin, Chopera, Denis R., Brumme, Chanson J., Markle, Tristan J., Martin, Eric, Shahid, Aniqa, Anmole, Gursev, Mwimanzi,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.97 MB

english, 2014

16

Magnitude and Kinetics of CD8+ T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point

Ndhlovu, Zaza M., Kamya, Philomena, Mewalal, Nikoshia, Kløverpris, Henrik N., Nkosi, Thandeka, Pretorius, Karyn, Laher, Faatima, Ogunshola, Funsho, Chopera, Denis, Shekhar, Karthik, Ghebremichael, Mus

Journal:

Year:

2015

Language:

english

File:

PDF, 5.53 MB

english, 2015

17

Immune-mediated attenuation of HIV-1

Chopera, Denis R, Wright, Jaclyn K, Brockman, Mark A, Brumme, Zabrina L

Journal:

Future Virology

Year:

2011

Language:

english

File:

PDF, 588 KB

english, 2011

18

Protection mechanisms in the resurrection plant Xerophyta viscosa : cloning, expression, characterisation and role of XvINO1 , a gene coding for a myo -inositol 1-phosphate synthase

Lehner, Arnaud, Chopera, Denis R., Peters, Shaun W., Keller, Felix, Mundree, Sagadevan G., Thomson, Jennifer A., Farrant, Jill M.

Journal:

Functional Plant Biology

Year:

2008

File:

PDF, 741 KB

2008

19

Killer-cell Immunoglobulin-like Receptor (KIR) gene profiles modify HIV disease course, not HIV acquisition in South African women

Naranbhai, V., de Assis Rosa, D., Werner, L., Moodley, R., Hong, H., Kharsany, A., Mlisana, K., Sibeko, S., Garrett, N., Chopera, D., Carr, W. H., Abdool Karim, Q., Hill, A. V. S., Abdool Karim, S. S.

Journal:

BMC Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 2.59 MB

english, 2015

20

Subtype-Specific Differences in Gag-Protease-Driven Replication Capacity are Consistent with Inter-Subtype Differences in HIV-1 Disease Progression

Kiguoya, Marion W., Mann, Jaclyn K., Chopera, Denis, Gounder, Kamini, Lee, Guinevere Q., Hunt, Peter W., Martin, Jeffrey N., Ball, T. Blake, Kimani, Joshua, Brumme, Zabrina L., Brockman, Mark A., Ndun

Journal:

Journal of Virology

Year:

2017

Language:

english

File:

PDF, 2.77 MB

english, 2017

21

Selection of HIV-1 variants with higher transmission potential by 1% tenofovir gel microbicide

Ngandu, Nobubelo Kwanele, Carlson, Jonathan Micheal, Chopera, Denis Rutendo, Ndabambi, Nonkululeko, Karim, Quarraisha Abdool, Karim, Salim Abdool, Williamson, Carolyn

Journal:

JAIDS Journal of Acquired Immune Deficiency Syndromes

Year:

2017

Language:

english

File:

PDF, 610 KB

english, 2017

22

Early evolution of human leucocyte antigen-associated escape mutations in variable Gag proteins predicts CD4+ decline in HIV-1 subtype C-infected women

Chopera, Denis R., Ntale, Roman, Ndabambi, Nonkululeko, Garrett, Nigel, Gray, Clive M., Matten, David, Abdool Karim, Quarraisha, Abdool Karim, Salim, Williamson, Carolyn

Journal:

Year:

2017

Language:

english

File:

PDF, 418 KB

english, 2017

23

No Evidence for Selection of HIV-1 with Enhanced Gag-Protease or Nef Function among Breakthrough Infections in the CAPRISA 004 Tenofovir Microbicide Trial

Chopera, Denis R., Mann, Jaclyn K., Mwimanzi, Philip, Omarjee, Saleha, Kuang, Xiaomei T., Ndabambi, Nonkululeko, Goodier, Sarah, Martin, Eric, Naranbhai, Vivek, Karim, Salim Abdool, Karim, Quarraisha

Journal:

Year:

2013

Language:

english

File:

PDF, 1.20 MB

english, 2013

24

Food label reading and understanding in parts of rural and urban Zimbabwe

Chopera, P, Chagwena, DT, Mushonga, NGT

Journal:

African Health Sciences

Year:

2014

Language:

english

File:

PDF, 356 KB

english, 2014

25

Fibroblast-Derived Extracellular Matrix Induces Chondrogenic Differentiation in Human Adipose-Derived Mesenchymal Stromal/Stem Cells in Vitro

Dzobo, Kevin, Turnley, Taegyn, Wishart, Andrew, Rowe, Arielle, Kallmeyer, Karlien, van Vollenstee, Fiona, Thomford, Nicholas, Dandara, Collet, Chopera, Denis, Pepper, Michael, Parker, M.

Journal:

International Journal of Molecular Sciences

Year:

2016

Language:

english

File:

PDF, 4.73 MB

english, 2016

26

Inhibition of CYP2B6 by Medicinal Plant Extracts: Implication for Use of Efavirenz and Nevirapine-Based Highly Active Anti-Retroviral Therapy (HAART) in Resource-Limited Settings

Thomford, Nicholas, Awortwe, Charles, Dzobo, Kevin, Adu, Faustina, Chopera, Denis, Wonkam, Ambroise, Skelton, Michelle, Blackhurst, Dee, Dandara, Collet

Journal:

Year:

2016

Language:

english

File:

PDF, 2.24 MB

english, 2016

27

In Vitro Reversible and Time-Dependent CYP450 Inhibition Profiles of Medicinal Herbal Plant Extracts Newbouldia laevis and Cassia abbreviata: Implications for Herb-Drug Interactions

Thomford, Nicholas, Dzobo, Kevin, Chopera, Denis, Wonkam, Ambroise, Maroyi, Alfred, Blackhurst, Dee, Dandara, Collet

Journal:

Year:

2016

Language:

english

File:

PDF, 4.75 MB

english, 2016

28

Pharmacogenomics Implications of Using Herbal Medicinal Plants on African Populations in Health Transition

Thomford, Nicholas, Dzobo, Kevin, Chopera, Denis, Wonkam, Ambroise, Skelton, Michelle, Blackhurst, Dee, Chirikure, Shadreck, Dandara, Collet

Journal:

Pharmaceuticals

Year:

2015

Language:

english

File:

PDF, 746 KB

english, 2015

29

Dual HLA B42 and B81-reactive T cell receptors recognize more diverse HIV-1 Gag escape variants

Ogunshola, Funsho, Anmole, Gursev, Miller, Rachel L., Goering, Emily, Nkosi, Thandeka, Muema, Daniel, Mann, Jaclyn, Ismail, Nasreen, Chopera, Denis, Ndung’u, Thumbi, Brockman, Mark A., Ndhlovu, Zaza M

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

30

African-led health research and capacity building- is it working?

Kasprowicz, Victoria O., Chopera, Denis, Waddilove, Kim Darley, Brockman, Mark A., Gilmour, Jill, Hunter, Eric, Kilembe, William, Karita, Etienne, Gaseitsiwe, Simani, Sanders, Eduard J., Ndungâu, Th

Journal:

BMC Public Health

Year:

2020

File:

PDF, 1020 KB

2020

31

Effect of the COVID-19-induced lockdown on nutrition, health and lifestyle patterns among adults in Zimbabwe

Matsungo, Tonderayi Mathew, Chopera, Prosper

Journal:

BMJ Nutrition, Prevention & Health

Year:

2020

File:

PDF, 395 KB

2020

32

crAssphage genomes identified in fecal samples of an adult and infants with evidence of positive genomic selective pressure within tail protein genes

Brown, Bryan P., Chopera, Denis, Havyarimana, Enock, Wendoh, Jerome, Jaumdally, Shameem, Nyangahu, Donald D., Gray, Clive M., Martin, Darren P., Varsani, Arvind, Jaspan, Heather B.

Journal:

Year:

2020

File:

PDF, 1.43 MB

2020